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ARTS: Accurate Recognition of Transcription Starts in Human
RASE: Recognition of alternatively Spliced Exons
Large Scale Genomic Sequence SVM Classifiers
Large Scale Multiple Kernel Learning
Large scale Hidden Semi-Markov SVMs
mGene: A Novel Discriminative Gene Finding System
An automated combination of kernels for protein subcellular localization
Margin-based Prediction of Polymorphic Regions
A General and Efficient Multiple Kernel Learning Algorithm
New Methods for Splice Site Recognition
Accurate Splice Site Detection in C. elegans
Accurate Splice Site Detection (Supplementary Material)
Shogun
Learning Interpretable SVMs for biological Sequence Analysis
PALMA: mRNA to Genome Alignments using Large Margin Algorithms
Bootstrapping the Alternative Splicing Annotation of Newly Sequenced Genomes
mSplicer
Transcript Normalization and Segmentation of Tiling Array Data
POIM
Optimal Spliced Alignments of Short Sequence Reads
Easysvm
RNA Secondary Structure Prediction using Large Margin Methods
KIRMES: Kernel-based Identification of Regulatory Modules in Euchromatic Sequences
Tutorial on Support Vector Machines and Kernels for Computational Biology
An Empirical Analysis of Domain Adaptation Algorithms for Genomic Sequence Analysis
rQuant: Quantitative Detection of Alternative Transcripts with RNA-Seq Data
PALMapper: Fast and Accurate Spliced Alignments of Sequence Read
srm-eval
rdiff
Long-term availability of bioinformatics web services
hmsvmtoolbox
Online Quantitative Transcriptome Analysis
Amino Acid String Kernels
coffin
mTiM: margin-based transcript mapping from RNA-seq
SAFT
Persistence and availability of web services in computational biology
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Shogun - A Large Scale Machine Learning Toolbox
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News
The group will join the Sloan-Kettering Institute in New York City in January 2012
Oct 25, 2011
Paper on Transfer Learning and Sequence Segmentation accepted at NIPS'11
Oct 23, 2011
The Labor Journal writes about the Web Service Study in an Editorial
Oct 23, 2011
Paper on the Analysis of 19 Genomes and Transcriptomes of Arabidopsis thaliana has been published in Nature
Aug 28, 2011
PLoS ONE accepts publication on Persistence and Availability of Web Services in Computational Biology
Aug 23, 2011
Best Oral Presentation Award Runner Up presented to Sebastian J. Schultheiss at SCS7
Jul 17, 2011
Best paper award for paper on transfer learning
Jul 03, 2011
Simple Alignment Filtering Tool (SAFT) released
Jun 08, 2011
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What's New?
The group will join the Sloan-Kettering Institute in New York City in January 2012